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different gene names/symbols for each isolate of same bacterial species after simulating single gene knockout

Zhaoju-Deng asked Apr 18, 2024 in Q&A · Answered

2
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Model optimization by integrating growth rate data from biolog
enhancement
hites77 asked Apr 17, 2024 in Q&A · Unanswered

3
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[BUG] No biomass flux when another objective is added for FBA analysis
bug
hites77 asked Mar 22, 2024 in Q&A · Answered

9
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Working model returns 0 objective value when duplicated

Kahuna-flipper asked Feb 21, 2024 in Q&A · Unanswered

5
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Flux magnitude concerns

kelseyaw asked Feb 12, 2024 in Q&A · Unanswered

0
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Loading and Editing a model

Rahmaabubakr asked Oct 1, 2023 in Q&A · Unanswered

4
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What are the mathematical models implemented in cobrapy?

galenseilis asked Oct 26, 2023 in Q&A · Unanswered

2
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model.metabolites.M_thf_LSQBKTc_RSQBKT.summary()

Rahmaabubakr asked Oct 1, 2023 in Q&A · Answered

2
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Getting an Error when i used a metabolite Identifier that contains a number

Rahmaabubakr asked Sep 24, 2023 in Q&A · Answered

3
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Hello I am new to python and Cobra, i would be grateful if you can provide me with steps to open an XML file from the computer and/or from online database, i tried the commands on Cobra documentation but i can't apply it.

Rahmaabubakr asked Sep 17, 2023 in Q&A · Answered

6
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MOMA predicts most genes to be essential

wshao1 asked Sep 15, 2023 in Q&A · Unanswered

20
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The differences between pFBA and normal FBA

complicatedZ asked Sep 6, 2023 in Q&A · Unanswered

2
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Making a function for a different type of FBA

joeybentley asked Aug 23, 2023 in Q&A · Answered

2
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Discrepancy Between Objective Flux and Biomass Flux in pFBA and loopless_solution

AmalReji asked Aug 16, 2023 in Q&A · Answered

3
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Looping through Model Bounds for Different Conditions

AmalReji asked Jun 2, 2023 in Q&A · Closed · Answered

4
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How to calculate growth rate in COBRA

complicatedZ asked Aug 9, 2023 in Q&A · Answered

7
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How can I load the BIGG universal model with COBRApy?
bug JSON
cdanielmachado asked Oct 14, 2020 in Q&A · Unanswered

12
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minimal media question

amarsh26 asked Feb 11, 2023 in Q&A · Answered

4
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Give parameters to model.optimize()

KurtzMarina asked Apr 21, 2023 in Q&A · Unanswered

3
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Delete duplicate reactions

helehera asked Jan 27, 2023 in Q&A · Unanswered

1
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Modeling endosymbiosis

shamadac asked Nov 28, 2022 in Q&A · Unanswered

0
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FBA of Harvey and Harvetta

Wieri9 asked Sep 22, 2022 in Q&A · Answered

3
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Model objective has flux but status is infeasible

PkiwiBird asked Aug 12, 2022 in Q&A · Answered

3
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does the merge function merge automatically the stoichiometric matrix of the two models?

Ilhem36 asked Aug 8, 2022 in Q&A · Answered

1
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Acess to coupling constraints in Harvey Model

Ilhem36 asked Jul 14, 2022 in Q&A · Unanswered

10