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@opencobra

openCOBRA

Community driven constraint-based reconstruction, analysis and modelling of biology

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  1. cobrapy cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 453 211

  2. cobratoolbox cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    MATLAB 239 305

  3. COBRA.jl COBRA.jl Public

    High-level, high-performance, constraint-based reconstruction and analysis in Julia

    Julia 59 31

  4. MASS-Toolbox MASS-Toolbox Public

    Mass Action Stoichiometric Simulation (MASS) Toolbox

    Mathematica 11 8

  5. MATLAB.devTools MATLAB.devTools Public

    MATLAB Development Tools

    MATLAB 27 34

  6. memote memote Public

    memote – the genome-scale metabolic model test suite

    HTML 123 26

Repositories

Showing 10 of 34 repositories
  • cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    opencobra/cobratoolbox’s past year of commit activity
    MATLAB 239 305 111 (1 issue needs help) 4 Updated Jun 25, 2024
  • swiglpk Public

    Simple swig bindings for the GNU Linear Programming Kit

    opencobra/swiglpk’s past year of commit activity
    Python 26 GPL-3.0 10 2 3 Updated Jun 1, 2024
  • COBRA.tutorials Public

    Repository of tutorials for The COBRA Toolbox

    opencobra/COBRA.tutorials’s past year of commit activity
    MATLAB 18 45 6 1 Updated May 28, 2024
  • COBRA.papers Public

    Repository for scripts related to reproducing the results of an individual publication

    opencobra/COBRA.papers’s past year of commit activity
    MATLAB 8 12 1 0 Updated May 21, 2024
  • cobrapy-scope Public

    Evaluation of a user survey from 2020 on what scope of methods is desirable in COBRApy.

    opencobra/cobrapy-scope’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated May 19, 2024
  • optlang Public

    optlang - sympy based mathematical programming language

    opencobra/optlang’s past year of commit activity
    Python 238 Apache-2.0 49 34 1 Updated Apr 26, 2024
  • cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    opencobra/cobrapy’s past year of commit activity
    Python 453 GPL-2.0 211 59 (4 issues need help) 14 Updated Apr 8, 2024
  • MASSef Public
    opencobra/MASSef’s past year of commit activity
    Mathematica 0 1 16 (2 issues need help) 0 Updated Feb 7, 2024
  • memote Public

    memote – the genome-scale metabolic model test suite

    opencobra/memote’s past year of commit activity
    HTML 123 Apache-2.0 26 125 1 Updated Jan 8, 2024
  • jeweler Public

    Test and grade genome-scale metabolic models (GEMs).

    opencobra/jeweler’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Nov 30, 2023
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