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978 Open 654 Closed
978 Open 654 Closed
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Issues list

conda post-deploy script not run for global env? bug Something isn't working
#2935 opened Jun 28, 2024 by sdruskat
Snakemake runs interactively with slurm but fails when submitting the slurm script bug Something isn't working question Further information is requested
#2934 opened Jun 27, 2024 by kf-cuanschutz
@cmeesters
1
Error when cleaning up metadata when using workdir in snakefile bug Something isn't working
#2933 opened Jun 27, 2024 by tbenavi1
How to debug snakemake files and referenced python scripts in IDEs like PyCharm or VsCode? enhancement New feature or request
#2932 opened Jun 27, 2024 by fhg-isi
Separately specifying group job "width" and "depth" enhancement New feature or request
#2931 opened Jun 26, 2024 by kdm9
Not enough context given in SyntaxError to debug problem
#2924 opened Jun 20, 2024 by WeatherGod
Slow DAG postprocessing on high-latency filesystems enhancement New feature or request
#2920 opened Jun 16, 2024 by benjeffery
@cmeesters
5
Issue with unlocking directory bug Something isn't working
#2919 opened Jun 16, 2024 by n318162971
1
Importing a Python module within a Snakemake module raises a ModuleNotFoundError bug Something isn't working
#2914 opened Jun 12, 2024 by ezherman
2
slurm job submission bug Something isn't working
#2912 opened Jun 10, 2024 by xl5525
16
slurm executor not printing logs on fail bug Something isn't working
#2911 opened Jun 10, 2024 by pdimens
13
Snakemake API
#2908 opened Jun 6, 2024 by gilmorera
mem_mb parsing error in workflow profile bug Something isn't working
#2903 opened May 30, 2024 by zhujack8
2
Error handling for pointing at non-existing script enhancement New feature or request
#2901 opened May 29, 2024 by KasperThystrup
file inclusion/exclusion control?
#2900 opened May 28, 2024 by cefect
--jobs does not consider --local-cores when executing localrules bug Something isn't working
#2896 opened May 27, 2024 by ckrushton
1
Module conflicts in workflows with a diamond-shape file structure bug Something isn't working
#2894 opened May 23, 2024 by mramospe
More descriptive error message for AmbiguousRuleException and update Documentation: Ruleorder enhancement New feature or request
#2893 opened May 23, 2024 by KasperThystrup
Allow child rule to inherit localrule tag enhancement New feature or request
#2892 opened May 23, 2024 by twillis209
Stop workflow (without error) if an output file is empty bug Something isn't working
#2891 opened May 22, 2024 by davidecrs
1
snakemake --export-cwl doesn't actually export CWL bug Something isn't working
#2889 opened May 21, 2024 by charmoniumQ
1
install snakemake using pip install git+https://github.com/snakemake/snakemake bug Something isn't working
#2885 opened May 20, 2024 by liamxg
2
Progress report when downloading from storage provider enhancement New feature or request
#2883 opened May 19, 2024 by ntessore
4
--quiet settings not intuitive bug Something isn't working
#2882 opened May 17, 2024 by pdimens
1
nested for loop in f-string bug Something isn't working
#2881 opened May 17, 2024 by sneuensc
1
2
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