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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 342 41

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 225 37

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 128 22

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 126 42

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 81 22

Repositories

Showing 10 of 177 repositories
  • cross-section Public

    Tools for computing properties of cross sections of 3D voxelized images.

    seung-lab/cross-section’s past year of commit activity
    C++ 3 LGPL-3.0 2 2 2 Updated Jun 26, 2024
  • em-fault-detection Public

    Detecting issues via online image analysis during high throughput electron microscopy.

    seung-lab/em-fault-detection’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 25, 2024
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 45 LGPL-3.0 5 0 0 Updated Jun 25, 2024
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 40 GPL-3.0 16 18 3 Updated Jun 24, 2024
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 126 BSD-3-Clause 42 81 3 Updated Jun 24, 2024
  • shard-computer Public

    Perform accelerated shard hash computation on numpy arrays.

    seung-lab/shard-computer’s past year of commit activity
    C++ 3 LGPL-2.1 0 0 0 Updated Jun 24, 2024
  • chunkflow Public

    Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

    seung-lab/chunkflow’s past year of commit activity
    Python 47 Apache-2.0 8 13 1 Updated Jun 24, 2024
  • zmesh Public

    Marching Cubes & Mesh Simplification on multi-label 3D images.

    seung-lab/zmesh’s past year of commit activity
    C++ 55 GPL-3.0 8 2 2 Updated Jun 23, 2024
  • pyspng-seunglab Public

    pyspng fork with updated install, compression, and CLI.

    seung-lab/pyspng-seunglab’s past year of commit activity
    Python 4 1 1 0 Updated Jun 23, 2024
  • mapbuffer Public

    Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.

    seung-lab/mapbuffer’s past year of commit activity
    Python 8 BSD-3-Clause 0 2 0 Updated Jun 22, 2024

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