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SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

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  1. seqan3 seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 391 81

  2. seqan seqan Public

    SeqAn's official repository.

    C++ 461 171

Repositories

Showing 10 of 47 repositories
  • raptor Public

    A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

    seqan/raptor’s past year of commit activity
    C++ 52 17 8 5 Updated Jun 28, 2024
  • actions Public
    seqan/actions’s past year of commit activity
    Shell 0 CC-BY-4.0 1 0 0 Updated Jun 25, 2024
  • seqan Public

    SeqAn's official repository.

    seqan/seqan’s past year of commit activity
    C++ 461 171 103 5 Updated Jun 25, 2024
  • seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    seqan/seqan3’s past year of commit activity
    C++ 391 81 28 4 Updated Jun 24, 2024
  • hibf_benchmarks Public

    WIP HIBF benchmarks

    seqan/hibf_benchmarks’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 2 Updated Jun 9, 2024
  • hibf Public

    HIBF and IBF

    seqan/hibf’s past year of commit activity
    C++ 4 2 4 4 Updated Jun 6, 2024
  • chopper Public

    A tool for partitioning a set of sequences into similar batches.

    seqan/chopper’s past year of commit activity
    C++ 9 BSD-3-Clause 9 6 2 Updated Jun 3, 2024
  • sharg-parser Public

    The modern argument parser for c++ tools

    seqan/sharg-parser’s past year of commit activity
    C++ 9 7 15 6 Updated Apr 29, 2024
  • stellar3 Public

    the SwifT Exact LocaL AligneR

    seqan/stellar3’s past year of commit activity
    C++ 0 BSD-3-Clause 2 0 0 Updated Apr 3, 2024
  • app-template Public template

    This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.

    seqan/app-template’s past year of commit activity
    CMake 6 9 19 0 Updated Mar 22, 2024
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