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schatzlab

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  1. genomescope genomescope Public

    Fast genome analysis from unassembled short reads

    JavaScript 237 56

  2. appliedgenomics2018 appliedgenomics2018 Public

    Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook 75 30

  3. appliedgenomics2017 appliedgenomics2017 Public

    JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML 55 15

  4. appliedgenomics2021 appliedgenomics2021 Public

    Materials for Spring 2021 Applied Genomics Course

    52 10

  5. crossstitch crossstitch Public

    Code for phasing SVs with SNPs

    Java 51 3

  6. pseudohaploid pseudohaploid Public

    Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl 31 5

Repositories

Showing 10 of 32 repositories
  • schatzlab.github.io Public

    Source materials for schatzlab.github.io

    schatzlab/schatzlab.github.io’s past year of commit activity
    HTML 2 2 0 0 Updated Jun 17, 2024
  • genomescope Public

    Fast genome analysis from unassembled short reads

    schatzlab/genomescope’s past year of commit activity
    JavaScript 237 Apache-2.0 56 73 4 Updated Apr 8, 2024
  • PodPlot Public

    Plot coverage or percent of total sequence as a function of minimum read length

    schatzlab/PodPlot’s past year of commit activity
    Python 5 3 1 0 Updated Mar 21, 2024
  • presentations Public

    Presentations from the schatzlab - http://schatz-lab.org/presentations/

    schatzlab/presentations’s past year of commit activity
    HTML 7 MIT 1 0 0 Updated Feb 9, 2024
  • appliedgenomics2023 Public

    Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics

    schatzlab/appliedgenomics2023’s past year of commit activity
    HTML 26 CC0-1.0 3 0 0 Updated Dec 21, 2023
  • wdl101-2023 Public

    wdl101 2023 edition

    schatzlab/wdl101-2023’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 20, 2023
  • t2t-chm13-chry Public
    schatzlab/t2t-chm13-chry’s past year of commit activity
    Jupyter Notebook 9 0 0 0 Updated Jul 9, 2023
  • appliedgenomics2022 Public

    Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics

    schatzlab/appliedgenomics2022’s past year of commit activity
    Jupyter Notebook 23 CC0-1.0 9 0 0 Updated Dec 8, 2022
  • long-read-commentary Public
    schatzlab/long-read-commentary’s past year of commit activity
    R 0 0 0 0 Updated Dec 1, 2022
  • t2t-variants Public
    schatzlab/t2t-variants’s past year of commit activity
    Papyrus 18 MIT 6 3 0 Updated Aug 8, 2022
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