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196 Open 7,472 Closed
196 Open 7,472 Closed
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Issues list

Unable to plot multiple genes using FeaturePlot() bug Something isn't working
#9058 opened Jun 26, 2024 by diyabasu97
Error integrating ATAC and scRNA data from different platforms using FindMultiModalNeighbors :"Error in dimnames(x) <- dn ..." bug Something isn't working
#9057 opened Jun 26, 2024 by Nh-code
Downsampling in rPCA integration
#9056 opened Jun 25, 2024 by lizchcase
All grouping variables have 1 value only. Computing across all cells. Error: No cell overlap between new meta data and Seurat object bug Something isn't working
#9055 opened Jun 25, 2024 by Flu09
1
why findvaribablefeature give warning with error in merged seurat object before harmony integration
#9052 opened Jun 25, 2024 by Rimanpreet1
SpatialFeaturePlot and SpatialDimplot cannot show the expressed dot
#9049 opened Jun 24, 2024 by gucascau
1
Error in match.arg(arg = value, choices = Assays(object = object)) : 'arg' should be one of “RNA”, “SCT”
#9048 opened Jun 24, 2024 by MonkeySylvia
BuildNicheAssay; best practice for optimal usage
#9044 opened Jun 24, 2024 by KoichiHashikawa
2
Can't find variable features after merging the seurat objects bug Something isn't working
#9038 opened Jun 20, 2024 by XLS987
@zskylarli
1
Major changes on Xenium v3 output files enhancement New feature or request
#9035 opened Jun 20, 2024 by agoan27
1
AddModuleScore do not work for Xenium object bug Something isn't working
#9034 opened Jun 20, 2024 by yxue88
CosMx spatial transcriptomics analysis by seurat
#9025 opened Jun 18, 2024 by arachuzzz
5
split integrated xenium objects bug Something isn't working
#9024 opened Jun 17, 2024 by yxue88
2
IntegrateLayers: Error in UseMethod(generic = "Assays", object = object) : no applicable method for 'Assays' applied to an object of class "NULL" bug Something isn't working
#9023 opened Jun 17, 2024 by changve
4
Genes missing after SCTransform and integration - how best to set # genes retained
#9018 opened Jun 14, 2024 by beazors
1
Integration with RPCA + SCTransform - reference reduction not present
#9017 opened Jun 13, 2024 by lizchcase
@zskylarli
1
Split.by should rasterize all plots bug Something isn't working
#9016 opened Jun 13, 2024 by AmandaK-Lilly
2
join layers or not ( contradicting vignettes) standard workflow and sketch
#9013 opened Jun 12, 2024 by Flu09
1
Qusetion about SCTransform and PrepSCTIntegration
#9008 opened Jun 11, 2024 by SYSUMSD
About result of FindMarkers
#9006 opened Jun 11, 2024 by MinadukiSora136
1
FindTransferAnchors => allow mapping of features between ref and query enhancement New feature or request
#9005 opened Jun 10, 2024 by nick-youngblut
2
How does single cell RNA reference look like? Converting from Seurat to cell2location.
#9004 opened Jun 10, 2024 by 532at
Data Integration + Batch Effect Removal
#9002 opened Jun 10, 2024 by jcasadogp
Issue when subsetting merged Seurat object bug Something isn't working
#9001 opened Jun 10, 2024 by AEstebanMar
Uncertain workflow for differential expression testing after SC Transform v2 + Harmony integration using IntegrateLayers
#8998 opened Jun 7, 2024 by jcm6t
1
ProTip! Adding no:label will show everything without a label.