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Issues: nf-core/tools

New functionality: nf-core config create
#2731 opened Feb 6, 2024 by jfy133
Open 1
[Project] Make nf-core create more customisable
#2340 opened Jun 27, 2023 by ewels
Open 3
[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
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238 Open 759 Closed
238 Open 759 Closed
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Issues list

Non-CLI usage of nf-core download enhancement
#3043 opened Jun 28, 2024 by seedgeorge
Download CI erroring since is using development version of tools bug Something isn't working
#3034 opened Jun 25, 2024 by JoseEspinosa
CLI helper to select EDAM ontologies for module inputs / outputs command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#3027 opened Jun 19, 2024 by ewels
Fetch bio.tools identifiers for module YAML file command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#3026 opened Jun 19, 2024 by ewels
Lint for correct meta.yml tuple structure in modules and subworkflows enhancement modules Related to tools for working with DSL2 modules
#3021 opened Jun 13, 2024 by mirpedrol
1
Support NXF_SINGULARITY_LIBRARYDIR in nf-core download download nf-core download enhancement
#3019 opened Jun 7, 2024 by muffato
1
meta information not matching between main.nf and meta.yml should result in failure enhancement
#3011 opened May 30, 2024 by mahesh-panchal
nf-core lint should not complain when label is double quoted, or fix quotation bug Something isn't working
#3010 opened May 30, 2024 by mahesh-panchal
nf-core lint stack trace error list index out of range bug Something isn't working
#3000 opened May 24, 2024 by mahesh-panchal
1
Add native support for multiple org_path in modules and subworkflows directories enhancement
#2996 opened May 22, 2024 by AlexVCaron
1
3
Add pipeline nf-test tests nf-test pipeline-testing
#2994 opened May 22, 2024 by mirpedrol
Lean down CLI for remote component repositories command line tools Anything to do with the cli interfaces
#2993 opened May 21, 2024 by AlexVCaron
4
Improve error message when modules directory is not empty bug Something isn't working
#2986 opened May 15, 2024 by matthdsm
nf-core sync will modify the template incorrectly if the pipeline prefix is uppercase bug Something isn't working
#2981 opened May 14, 2024 by human9
2
Add nf-schema comment to the plugin import and sample sheet channel generation schema template nf-core pipeline/component template
#2980 opened May 13, 2024 by ramirobarrantes
1
Add link to docs in warning about missing GitHub authentication token enhancement
#2977 opened May 13, 2024 by asp8200
[create]: Make textual tests pass locally enhancement
#2975 opened May 10, 2024 by mirpedrol
Pipeline CI dependant of the template version enhancement high-priority linting
#2966 opened May 9, 2024 by mirpedrol 3.0
@mirpedrol
[create]: Add button to open the created repo enhancement
#2965 opened May 9, 2024 by mirpedrol
[create]: Show org + repo name that will be created enhancement
#2964 opened May 9, 2024 by mirpedrol
[create]: different pipeline name validation for nf-core and custom pipelines enhancement
#2963 opened May 9, 2024 by mirpedrol
Using the nfcore/tools docker image gets permission denied now bug Something isn't working
#2944 opened May 1, 2024 by thondeboer
ToDo: Refactor SyncedRepo class and its subclasses ModulesRepo and WorkflowRepo enhancement infrastructure modules Related to tools for working with DSL2 modules subworkflows
#2940 opened Apr 28, 2024 by MatthiasZepper
Update linting to support to changes introduced in nf-schema enhancement
#2932 opened Apr 24, 2024 by nvnieuwk 3.0
2
Subworkflow installation bug bug Something isn't working
#2928 opened Apr 22, 2024 by IreneRobles
ProTip! Exclude everything labeled bug with -label:bug.