Skip to content
@ncbi-nlp

NLM/NCBI BioNLP Research Group (PI: Zhiyong Lu)

These tools are the results of research conducted in the Computational Biology Branch, NLM/NCBI. More information about NLM/NCBI's disclaimer policy is availabl

Popular repositories Loading

  1. BioSentVec BioSentVec Public

    BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

    Jupyter Notebook 563 97

  2. bluebert bluebert Public

    BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

    Python 542 77

  3. BLUE_Benchmark BLUE_Benchmark Public

    BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

    Python 281 40

  4. NegBio NegBio Public

    📰 High-performance tool for negation and uncertainty detection in radiology reports

    Python 154 41

  5. BioWordVec BioWordVec Public

    Python 141 29

  6. DeepSeeNet DeepSeeNet Public

    👀 DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.

    Python 57 27

Repositories

Showing 10 of 27 repositories
  • MedCalc-Bench Public

    Benchmarking the medical calculation capabilities of large language models.

    ncbi-nlp/MedCalc-Bench’s past year of commit activity
    Python 16 1 1 0 Updated Jun 25, 2024
  • TrialGPT Public

    Code and data for TrialGPT.

    ncbi-nlp/TrialGPT’s past year of commit activity
    Python 18 4 0 0 Updated May 31, 2024
  • PhenoTagger Public

    PhenoTagger

    ncbi-nlp/PhenoTagger’s past year of commit activity
    GAP 50 MIT 12 0 0 Updated Jan 24, 2024
  • TeamTat Public

    Text annotation tool for team collaboration

    ncbi-nlp/TeamTat’s past year of commit activity
    JavaScript 34 MIT 12 8 8 Updated Jan 10, 2024
  • NCBITextLib Public

    Software library for building a large-scale data infrastructure for text mining

    ncbi-nlp/NCBITextLib’s past year of commit activity
    C++ 7 4 1 1 Updated Jan 7, 2024
  • Medical-Imaging-Causal-Fairness Public
    ncbi-nlp/Medical-Imaging-Causal-Fairness’s past year of commit activity
    Python 1 0 0 0 Updated Jan 4, 2024
  • BioWordVec Public
    ncbi-nlp/BioWordVec’s past year of commit activity
    Python 141 29 1 1 Updated Nov 30, 2023
  • pubtator-gpt Public
    ncbi-nlp/pubtator-gpt’s past year of commit activity
    10 2 0 0 Updated Nov 30, 2023
  • DeepSeeNet Public

    👀 DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.

    ncbi-nlp/DeepSeeNet’s past year of commit activity
    Python 57 27 2 1 Updated Nov 28, 2023
  • PhenoRerank Public
    ncbi-nlp/PhenoRerank’s past year of commit activity
    Python 1 1 0 0 Updated Aug 24, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…