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@rust-bio @iqbal-lab-org @Snakemake-Profiles @snakemake @Mykrobe-tools
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  1. rasusa rasusa Public

    Randomly subsample sequencing reads or alignments

    Rust 195 17

  2. snakemake/snakefmt snakemake/snakefmt Public

    The uncompromising Snakemake code formatter

    Python 143 25

  3. ssubmit ssubmit Public

    Submit slurm sbatch jobs without a script

    Rust 61 5

  4. pafpy pafpy Public

    A lightweight library for working with PAF (Pairwise mApping Format) files

    Python 31 3

  5. compression_benchmark compression_benchmark Public

    Benchmarking fastq compression with generic (mature) compression algorithms

    Python 27 4

  6. ontime ontime Public

    Extract subsets of ONT (Nanopore) reads based on time

    Rust 19 1