- 🔭 I’m currently working on: implementing ML models in analysis & pipeline automation & spatial transcriptomics neighbourhood analysis (interactVis)!
- 🌱 I’m currently learning: NextFlow!
- 💬 Ask me about: Anything! I'll try and help as best as I can!
- 📫 How to reach me: LinkedIn
- ⚡ Fun fact: I went to high school in China! And my profile picture is AI generated (surprise!).
I am a passionate Bioinformatician at the Genome Centre (Queen Mary University of London), a core facility providing NGS services and analysis to internal and external clients. I learnt to code (R) and the basics of bioinformatics during my PhD, which was focussed on the epigenetic and transcriptomic profiles of Glioblastoma brain tumours. Being predominantly self-taught; I love the continual learning process of coding and bioinformatics which makes everyday exciting!
I have experience with many dataset types including:
- Bulk-RNAseq
- Single-cell-RNAseq
- Spatial transcriptomics
- ChIPseq
- RRBS
- Methylation arrays
- WGS
- Flow cytometry
My services range from support to full analysis pipelines for clients, which may include where appropriate:
- Quality control
- Filtering
- Normalisation
- Dimensionality reduction
- Clustering
- Exploratory analysis
- Batch correction
- Differential analysis
- Pathway analysis and more.