Add a material interface reaction

[parmar0]

Add a material interface reaction. Closes #27736

Reason

Need to model variable reaction rates.

Design

Adding a class with reaction rate coefficients specified by AD Material Properties.

Impact

Allows users to model variable reaction rates.

[ke7kto]

Good first draft, but I think I see some errors.

[moosebuild]

Job Precheck on 34794f0 wanted to post the following:

Your code requires style changes.

A patch was auto generated and copied here
You can directly apply the patch by running, in the top level of your repository:

curl -s https://mooseframework.inl.gov/docs/PRs/27737/clang_format/style.patch | git apply -v

Alternatively, with your repository up to date and in the top level of your repository:

git clang-format 4409da00956c2511d3f6c6db886956a265cd4dd9

[lindsayad]

You're failing precheck because of trailing whitespace

##########################################################################
ERROR: The following files contain trailing whitespace after applying your patch:
	test/tests/interfacekernels/1d_interface/ADMatreaction_1D_transient.i

Run the "delete_trailing_whitespace.sh" script in your $MOOSE_DIR/scripts directory.

ERROR: The following files do not contain a newline character before EOF:
	test/tests/interfacekernels/1d_interface/ADMatreaction_1D_transient.i

Run the "delete_trailing_whitespace.sh" script in your $MOOSE_DIR/scripts directory.

[moosebuild]

Job Documentation on c1b574e wanted to post the following:

View the site here

This comment will be updated on new commits.

[ke7kto]

@lindsayad I noticed that Akanksha's csvdiff was failing because she wasn't specifying the right csv output file in her test/tests/interfacekernels/1d_interface/ADMatreaction_1D_steady.i. She's put together a fix for that. I had initially thought that the best practice would be to use the same gold file and save space, but is there a chance of a race condition here if we go that route? Should we instead create a new gold csv output - there should be no difference between the reaction_1D_steady and ADMatReaction_1D_steady files.

[lindsayad]

I usually create a symlink in the gold file directory. This removes the possibility of a race condition

[moosebuild]

Job Coverage on c1b574e wanted to post the following:

Framework coverage

	d964da	#27737 c1b574
	Total	Total	+/-	New
Rate	85.06%	85.06%	+0.00%	90.91%
Hits	104413	104432	+19	20
Misses	18334	18337	+3	2

Diff coverage report

Full coverage report

Modules coverage

Coverage did not change

Full coverage reports

Reports

• framework
• chemical_reactions
• combined
• contact
• electromagnetics
• external_petsc_solver
• fluid_properties
• fsi
• functional_expansion_tools
• geochemistry
• heat_transfer
• level_set
• misc
• navier_stokes
• optimization
• peridynamics
• phase_field
• porous_flow
• ray_tracing
• rdg
• reactor
• richards
• scalar_transport
• solid_mechanics
• solid_properties
• stochastic_tools
• thermal_hydraulics
• xfem

This comment will be updated on new commits.

[lindsayad]

Please remove the merge commit. You can use rebase if you need something new on next

[ke7kto]

@lindsayad I think the tests should all be good now, but we have a couple of the modules test that are timing out.

[lindsayad]

thanks for your contribution @parmar0 !

[ke7kto]

@lindsayad We've tried to remove any references to the large_media submodule (revert to previous commit, force push), but it seems that we're still trying to change it somehow. We haven't touched that folder. Is this something we need to put more time into, or is there an easy way to remove that from the PR at this point

[cticenhour]

@ke7kto The easiest way at this point, with the current history, is fixing up the commit that contains the update.

cd ~/projects/moose/large_media   # or wherever this MOOSE is
git checkout 2fe4657bc59b93eb8179d22fa1b3ba137361b6b3
cd ..
git add large_media
git commit --fixup 9463948f019e99c8ac39f6613a0135f156e6c1f9
git rebase -i bac2b46800b29699032680442b035c2266eaa99a --autosquash
git push -f origin materialInterfaceReaction  # If "origin" is the name of the remote this is on....change as necessary

EDIT: you might need to cd ~/projects/moose; git submodule update --init large_media prior to cd-ing into the large_media directory

EDIT2: During the autosquash procedure, it'll likely drop you into VIM. Inspect the sequence of commits and if its to your liking, simply :wq.

[cticenhour]

@ke7kto Looks like your last formatting commit didn't apply through the push - did you not see it in the rebase?

EDIT: Good thing is - I don't see the large media submodule in this anymore! 😄

[lindsayad]

thanks for your hard work on this @ke7kto and opening my eyes to these neat interface conditions. Will merge pending tests passing