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@cnr-ibba

CNR-IBBA

Bioinformatic Group @ CNR-IBBA

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  1. SMARTER-database SMARTER-database Public

    Smarter database repository

    Jupyter Notebook

  2. r-smarter-api r-smarter-api Public

    R code to query SMARTER-backend

    R 2

  3. IMAGE-InjectTool IMAGE-InjectTool Public

    Load IMAGE data into BioSample

    Python 3

  4. pyUSIrest pyUSIrest Public

    Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions Interface

    Python 1

  5. dockerfiles dockerfiles Public

    A useful repository for Docker file

    Perl 4 1

  6. shiny-server shiny-server Public

    Shiny Server @CNR-IBBA

    JavaScript 7 2

Repositories

Showing 10 of 25 repositories
  • r-smarter-api Public

    R code to query SMARTER-backend

    cnr-ibba/r-smarter-api’s past year of commit activity
    R 2 GPL-3.0 0 5 1 Updated Jun 25, 2024
  • SMARTER-frontend Public

    SMARTER Database frontend

    cnr-ibba/SMARTER-frontend’s past year of commit activity
    TypeScript 0 0 6 4 Updated Jun 24, 2024
  • SMARTER-backend Public

    SMARTER Backend API

    cnr-ibba/SMARTER-backend’s past year of commit activity
    Python 0 GPL-3.0 0 9 2 Updated Jun 21, 2024
  • SMARTER-database Public

    Smarter database repository

    cnr-ibba/SMARTER-database’s past year of commit activity
    Jupyter Notebook 0 MIT 0 10 2 Updated Jun 17, 2024
  • nf-chip-alignment Public

    Align chip probes to a reference genome

    cnr-ibba/nf-chip-alignment’s past year of commit activity
    Python 0 MIT 0 2 0 Updated May 2, 2024
  • dockerfiles Public

    A useful repository for Docker file

    cnr-ibba/dockerfiles’s past year of commit activity
    Perl 4 GPL-3.0 1 0 1 Updated Apr 15, 2024
  • nf-resequencing-mem Public

    Nextflow resequencing pipeline with bwa-mem and freebayes

    cnr-ibba/nf-resequencing-mem’s past year of commit activity
    Nextflow 0 MIT 0 4 0 Updated Apr 11, 2024
  • nf-treeseq Public

    Nextflow pipeline to convert genotype data into Tree Sequences

    cnr-ibba/nf-treeseq’s past year of commit activity
    Nextflow 0 0 3 0 Updated Apr 10, 2024
  • nf-modules Public

    Custom Nextflow DSL2 modules

    cnr-ibba/nf-modules’s past year of commit activity
    Nextflow 0 MIT 0 3 1 Updated Mar 15, 2024
  • nf-neestimator Public

    A nextflow pipeline for Current Effective Population Size (Ne) calculations with bootstrapping

    cnr-ibba/nf-neestimator’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Mar 4, 2024
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