Skip to content
@aristoteleo

Aristotle

Foundational software ecosystem for predictive biology

Pinned Loading

  1. dynamo-release dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    Python 404 59

  2. spateo-release spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    Python 147 24

  3. dynast-release dynast-release Public

    Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments

    Python 15 4

  4. dynamo-tutorials dynamo-tutorials Public

    Tutorials on using latest dynamo package

    Jupyter Notebook 23 10

  5. Scribe-py Scribe-py Public

    Regulatory networks with Direct Information in python

    Python 38 7

  6. Scribe Scribe Public

    Forked from cole-trapnell-lab/Scribe

    Regulatory networks with Direct Information

    C++

Repositories

Showing 10 of 43 repositories
  • spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    aristoteleo/spateo-release’s past year of commit activity
    Python 147 BSD-2-Clause 24 10 5 Updated Jun 26, 2024
  • spateo-tutorials Public

    tutorials for spateo package

    aristoteleo/spateo-tutorials’s past year of commit activity
    Jupyter Notebook 6 MIT 1 4 0 Updated Jun 26, 2024
  • dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    aristoteleo/dynamo-release’s past year of commit activity
    Python 404 BSD-3-Clause 59 7 (3 issues need help) 16 Updated Jun 21, 2024
  • qiu_lab_website Public

    The source code for the Qiu lab website (based on ato-neulab)

    aristoteleo/qiu_lab_website’s past year of commit activity
    HTML 0 MIT 0 8 0 Updated Jun 17, 2024
  • spateo-viewer Public

    Web application demonstrating 3D modeling of spatial transcriptomics

    aristoteleo/spateo-viewer’s past year of commit activity
    Python 10 BSD-2-Clause 3 1 0 Updated May 9, 2024
  • dynamo_readthedocs Public

    deposit tutorials for dynamo readthedocs pages

    aristoteleo/dynamo_readthedocs’s past year of commit activity
    Python 0 BSD-3-Clause 6 0 1 Updated Mar 11, 2024
  • CSP4ML Public

    repo for modeling and analyzing metabolic labeling data

    aristoteleo/CSP4ML’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jan 17, 2024
  • dynast-release Public

    Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments

    aristoteleo/dynast-release’s past year of commit activity
    Python 15 MIT 4 3 1 Updated Aug 15, 2023
  • dynamo-tutorials Public

    Tutorials on using latest dynamo package

    aristoteleo/dynamo-tutorials’s past year of commit activity
    Jupyter Notebook 23 10 3 0 Updated May 25, 2023
  • cookiecutter-data-science Public template Forked from drivendataorg/cookiecutter-data-science

    A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

    aristoteleo/cookiecutter-data-science’s past year of commit activity
    Python 0 MIT 2,387 0 0 Updated Mar 24, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…