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@ParkerLab

The Parker Lab at the University of Michigan

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  1. ataqv ataqv Public

    A toolkit for QC and visualization of ATAC-seq results.

    C++ 63 10

  2. atactk atactk Public

    A toolkit for working with ATAC-seq data.

    Python 24 4

  3. bioinf545 bioinf545 Public

    ATAC-seq lab for BIOINF545

    Shell 24 13

  4. bioinf525 bioinf525 Public

    ATAC-seq lab for BIOINF525

    Shell 10 10

  5. BMO BMO Public

    BMO - a tool for predicting TF binding from ATAC-seq data

    R 9 1

  6. ATACseq-Snakemake ATACseq-Snakemake Public

    Forked from porchard/ATACseq-Snakemake

    Standard Parker Lab ATAC-seq processing pipeline in Snakemake form

    Python 6 1

Repositories

Showing 10 of 27 repositories
  • atactk Public

    A toolkit for working with ATAC-seq data.

    ParkerLab/atactk’s past year of commit activity
    Python 24 GPL-3.0 4 2 0 Updated Jun 11, 2024
  • bioinf545 Public

    ATAC-seq lab for BIOINF545

    ParkerLab/bioinf545’s past year of commit activity
    Shell 24 13 0 0 Updated Mar 12, 2024
  • sn_muscle_2023 Public

    Code for snATAC + snRNA analyses

    ParkerLab/sn_muscle_2023’s past year of commit activity
    Python 0 0 0 0 Updated Nov 8, 2023
  • ataqv Public

    A toolkit for QC and visualization of ATAC-seq results.

    ParkerLab/ataqv’s past year of commit activity
    C++ 63 GPL-3.0 10 3 0 Updated Feb 17, 2023
  • BMO Public

    BMO - a tool for predicting TF binding from ATAC-seq data

    ParkerLab/BMO’s past year of commit activity
    R 9 GPL-3.0 1 1 0 Updated Jun 7, 2022
  • chromatin_information Public

    A companion repository to our chromatin information manuscript

    ParkerLab/chromatin_information’s past year of commit activity
    Python 2 1 0 0 Updated Mar 2, 2022
  • 2021_islet-rfx6 Public

    Code for Walker, Saunders, Rai et al., (2021).

    ParkerLab/2021_islet-rfx6’s past year of commit activity
    Roff 2 0 0 0 Updated Feb 2, 2022
  • 2021-03-sn-muscle Public Forked from porchard/2021-03-sn-muscle
    ParkerLab/2021-03-sn-muscle’s past year of commit activity
    HTML 0 1 0 0 Updated Sep 13, 2021
  • cta Public

    C++ implementation of Buenrostro adapter trimming

    ParkerLab/cta’s past year of commit activity
    C++ 2 5 2 1 Updated Jul 13, 2021
  • magic_final Public

    MAGIC glycemic GWAS enrichment in annotations

    ParkerLab/magic_final’s past year of commit activity
    Rebol 1 1 0 0 Updated Mar 15, 2021
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