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@NYU-Molecular-Pathology

NYU-Molecular-Pathology

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  1. LG-PACT LG-PACT Public

    NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.

    Nextflow 8

  2. NGS580-nf NGS580-nf Public

    Target exome sequencing analysis for NYU NGS580 gene panel

    Nextflow 10 6

  3. demux-nf demux-nf Public

    Nextflow pipeline for Illumina NGS demultiplexing

    Nextflow 3 2

  4. Methylation Methylation Public

    DNA methylation for tumor subclassifications by methylation array.

    R 3 1

  5. heme-reporter heme-reporter Public

    Clinical reporting application for Oncomine Myeloid assay results.

    HTML 1

Repositories

Showing 10 of 31 repositories
  • demux-nf Public

    Nextflow pipeline for Illumina NGS demultiplexing

    NYU-Molecular-Pathology/demux-nf’s past year of commit activity
    Nextflow 3 GPL-3.0 2 2 0 Updated Jun 27, 2024
  • Methylation Public

    DNA methylation for tumor subclassifications by methylation array.

    NYU-Molecular-Pathology/Methylation’s past year of commit activity
    R 3 1 1 0 Updated Jun 24, 2024
  • LG-PACT Public

    NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.

    NYU-Molecular-Pathology/LG-PACT’s past year of commit activity
    Nextflow 8 GPL-3.0 0 0 0 Updated Jun 18, 2024
  • tuco Public

    Laboratory Information Management System (LIMS)

    NYU-Molecular-Pathology/tuco’s past year of commit activity
    Python 1 GPL-3.0 1 6 2 Updated Apr 21, 2023
  • onco-reporter Public

    Oncomine solid tumor reporting application

    NYU-Molecular-Pathology/onco-reporter’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Mar 1, 2023
  • automation-scripts Public

    repo for automation python/R scripts

    NYU-Molecular-Pathology/automation-scripts’s past year of commit activity
    Python 0 0 0 0 Updated Dec 9, 2022
  • heme-reporter Public

    Clinical reporting application for Oncomine Myeloid assay results.

    NYU-Molecular-Pathology/heme-reporter’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Jun 24, 2022
  • oncomine_automation Public

    oncomine automation

    NYU-Molecular-Pathology/oncomine_automation’s past year of commit activity
    0 MIT 1 0 0 Updated May 27, 2022
  • NGS580-nf Public

    Target exome sequencing analysis for NYU NGS580 gene panel

    NYU-Molecular-Pathology/NGS580-nf’s past year of commit activity
    Nextflow 10 GPL-3.0 6 17 (1 issue needs help) 0 Updated Sep 29, 2021
  • IR-interpreter Public

    Web app for clinical interpretation of Ion Reporter variant results

    NYU-Molecular-Pathology/IR-interpreter’s past year of commit activity
    Python 4 GPL-3.0 2 2 1 Updated Jun 10, 2021
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