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@EDS-Bioinformatics-Laboratory

Bioinformatics Laboratory

Bioinformatics & Computational modelling

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  1. ComputingInR ComputingInR Public

    Forked from pdmoerland/ComputingInR

    Perry Moerland: Teaching material for the course Computing in R

    HTML

  2. ENCORE ENCORE Public

    ENCORE: Enhancing Computational Reproducibility (Version 4.1.1)

    Python 1

  3. ENCORE_AUTOMATION ENCORE_AUTOMATION Public

    ENCORE_AUTOMATION

    HTML

  4. FSS-Navigator FSS-Navigator Public

    Antoine van Kampen, Aldo Jongejan, Utkarsh Mahamune: The standardized file system structure (FSS) navigator

    HTML

Repositories

Showing 10 of 14 repositories
  • ENCORE Public

    ENCORE: Enhancing Computational Reproducibility (Version 4.1.1)

    EDS-Bioinformatics-Laboratory/ENCORE’s past year of commit activity
    Python 1 0 4 0 Updated Jun 24, 2024
  • ENCORE_AUTOMATION Public

    ENCORE_AUTOMATION

    EDS-Bioinformatics-Laboratory/ENCORE_AUTOMATION’s past year of commit activity
    HTML 0 0 1 0 Updated Jun 19, 2024
  • reseda Public

    Barbera van Schaik, Antoine van Kampen: REpertoire SEquence Data Analysis

    EDS-Bioinformatics-Laboratory/reseda’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 12, 2024
  • ENCORE-AIRRseq-TEMPLATE Public

    Barbera van Schaik, Antoine van Kampen: ENCORE project for analysis for T-cell and B-cell repertoires

    EDS-Bioinformatics-Laboratory/ENCORE-AIRRseq-TEMPLATE’s past year of commit activity
    Python 0 0 0 0 Updated May 31, 2024
  • FSS-Navigator Public

    Antoine van Kampen, Aldo Jongejan, Utkarsh Mahamune: The standardized file system structure (FSS) navigator

    EDS-Bioinformatics-Laboratory/FSS-Navigator’s past year of commit activity
    HTML 0 GPL-3.0 0 10 0 Updated May 1, 2024
  • PhDthesisUmeshNandal Public

    Umesh Nandal, Perry Moerland: additional files for chapters 4 and 5 of the PhD thesis of Umesh Nandal

    EDS-Bioinformatics-Laboratory/PhDthesisUmeshNandal’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Aug 5, 2023
  • Clonal_aRt_visualization Public

    Visual artsy representation of B-cell clonal repertoires using R

    EDS-Bioinformatics-Laboratory/Clonal_aRt_visualization’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 16, 2023
  • Assess_spatial_reconstruction_scRNAseq Public
    EDS-Bioinformatics-Laboratory/Assess_spatial_reconstruction_scRNAseq’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 17, 2023
  • scRNAseqVisualization Public Forked from tobias-beers/RNA_visualization

    Tobias Beers, Perry Moerland: MSc Computational Science project on (hierarchical) PPCA-techniques for scRNA-seq data.

    EDS-Bioinformatics-Laboratory/scRNAseqVisualization’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Apr 16, 2023
  • GC_ABM_SHM_network Public

    Rodrigo García-Valiente, Elena Merino, Antoine van Kampen. ABM of the germinal center with implementation of SHM fate tree, sequence representation and PC/MBC gene network.

    EDS-Bioinformatics-Laboratory/GC_ABM_SHM_network’s past year of commit activity
    Standard ML 0 1 0 0 Updated Jul 20, 2022
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