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Allow WDL workflow inputs to depend on tasks in the workflow
wdl
#4993
opened Jun 27, 2024 by
adamnovak
toil-wdl-runner does not handle string to file coercion properly for optional file types
#4992
opened Jun 27, 2024 by
stxue1
Prevent simultaneous pulls of Singularity images by toil-cwl-runner: add locking
cwl
#4990
opened Jun 25, 2024 by
unito-bot
Defer file virtualization until use for WDL String-to-File coercion
#4988
opened Jun 24, 2024 by
stxue1
Move/write list_multipart_uploads to its own library file and add a test.
#4987
opened Jun 24, 2024 by
DailyDreaming
Move/write head_s3_object to its own library file and add a test.
#4986
opened Jun 24, 2024 by
DailyDreaming
Move/write delete_iam_instance_profile to its own library file and add a test.
#4985
opened Jun 24, 2024 by
DailyDreaming
Move/write delete_iam_role to its own library file and add a test.
#4984
opened Jun 24, 2024 by
DailyDreaming
Removing whitespace in WDL doesn't work for overindented code blocks
#4983
opened Jun 22, 2024 by
stxue1
Toil can hang when something goes wrong with file locking on Ceph
#4972
opened Jun 17, 2024 by
adamnovak
toil-cwl-runner used to allow
--defaultMemory 0
, which has special meaning to Slurm, but now no longer does
#4971
opened Jun 17, 2024 by
gmloose
Make WDL errors and container dumps trace where files came from
wdl
#4968
opened Jun 11, 2024 by
unito-bot
Add an argument to specify number of GPUs to use for a
toil-wdl-runner
task
#4945
opened May 23, 2024 by
stxue1
Replace all the _OVERRIDE environment variables with options on toil debug-job
#4942
opened May 21, 2024 by
unito-bot
document
toil{,-cwl-runner}
tips from Manabu's presentation at CWLCon2024
#4931
opened May 15, 2024 by
mr-c
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