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@DKFZ-ODCF

DKFZ - ODCF

GitHub organization for the DKFZ Omics IT and Data Management Core Facility

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  1. ACEseqWorkflow ACEseqWorkflow Public

    Allele-specific copy number estimation with whole genome sequencing

    R 24 10

  2. DKFZBiasFilter DKFZBiasFilter Public

    Python 12 7

  3. AlignmentAndQCWorkflows AlignmentAndQCWorkflows Public

    The DKFZ alignment workflow plugin originally developed at the eilslabs

    Python 7 5

  4. SNVCallingWorkflow SNVCallingWorkflow Public

    The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow

    Python 7 4

  5. IndelCallingWorkflow IndelCallingWorkflow Public

    A Platypus-based workflow for indel calling

    Python 5 5

  6. RNAseqWorkflow RNAseqWorkflow Public

    Roddy RNA-seq Workflow Plugin

    Perl 5 4

Repositories

Showing 10 of 26 repositories
  • RNAseqWorkflow Public

    Roddy RNA-seq Workflow Plugin

    DKFZ-ODCF/RNAseqWorkflow’s past year of commit activity
    Perl 5 4 7 0 Updated Jun 12, 2024
  • sophia Public

    The Sophia structural variation caller. Fork of https://bitbucket.org/utoprak/sophia.

    DKFZ-ODCF/sophia’s past year of commit activity
    C++ 2 GPL-3.0 0 14 2 Updated Jun 6, 2024
  • IndelCallingWorkflow Public

    A Platypus-based workflow for indel calling

    DKFZ-ODCF/IndelCallingWorkflow’s past year of commit activity
    Python 5 5 4 2 Updated May 31, 2024
  • SNVCallingWorkflow Public

    The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow

    DKFZ-ODCF/SNVCallingWorkflow’s past year of commit activity
    Python 7 4 2 2 Updated May 31, 2024
  • SophiaWorkflow Public

    A Roddy plugin to run the Sophia tool.

    DKFZ-ODCF/SophiaWorkflow’s past year of commit activity
    Python 3 GPL-2.0 1 6 1 Updated Apr 3, 2024
  • nf-bam2fastq Public

    Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.

    DKFZ-ODCF/nf-bam2fastq’s past year of commit activity
    Shell 3 4 8 1 Updated Mar 8, 2024
  • odcf-guide Public

    Read-Only mirror; please see GitLab for main repo

    DKFZ-ODCF/odcf-guide’s past year of commit activity
    Kotlin 1 0 0 0 Updated Jan 25, 2024
  • igv-crawler Public

    Crawl any filesystem for genome data, providing one-click opening in IGV. READ ONLY REPOSITORY.

    DKFZ-ODCF/igv-crawler’s past year of commit activity
    Perl 1 MIT 1 1 0 Updated Dec 5, 2023
  • ACEseqWorkflow Public

    Allele-specific copy number estimation with whole genome sequencing

    DKFZ-ODCF/ACEseqWorkflow’s past year of commit activity
    R 24 MIT 10 2 1 Updated Nov 10, 2023
  • AlignmentAndQCWorkflows Public

    The DKFZ alignment workflow plugin originally developed at the eilslabs

    DKFZ-ODCF/AlignmentAndQCWorkflows’s past year of commit activity
    Python 7 5 46 2 Updated Oct 5, 2023
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