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Intelligent Data Processing and Applications course project where the objective is to implement a RNA sequences differencing (edit distance) and patching tool, which can be applied on different kinds of RNA sequence formats (such as FASTQ, EMBL, FASTA, GCG, etc.).

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Charbel199/rna-sequence-differencing

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RNA Sequence Differencing

RNA Sequence differencing utilizes Tree edit distance algorithms and Information retrieval algorithms to compute similarities and integrate them in a search system.

Requirements

pip install -r requirements.txt

Usage

Open run.bat and select the desired mode.

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Intelligent Data Processing and Applications course project where the objective is to implement a RNA sequences differencing (edit distance) and patching tool, which can be applied on different kinds of RNA sequence formats (such as FASTQ, EMBL, FASTA, GCG, etc.).

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