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@BorgwardtLab

Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

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  1. TOGL TOGL Public

    Topological Graph Neural Networks (ICLR 2022)

    Python 105 20

  2. SAT SAT Public

    Official Pytorch code for Structure-Aware Transformer.

    Python 226 34

Repositories

Showing 10 of 101 repositories
  • WTK Public

    A Wasserstein Subsequence Kernel for Time Series.

    BorgwardtLab/WTK’s past year of commit activity
    Python 21 MIT 7 0 1 Updated Jun 17, 2024
  • CARPE Public
    BorgwardtLab/CARPE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 15, 2024
  • NeuralWalker Public

    Official Pytorch implementation of NeuralWalker

    BorgwardtLab/NeuralWalker’s past year of commit activity
    Python 10 BSD-3-Clause 0 0 0 Updated Jun 6, 2024
  • proteinshake Public

    Protein structure datasets for machine learning.

    BorgwardtLab/proteinshake’s past year of commit activity
    Python 84 BSD-3-Clause 6 84 2 Updated Jun 3, 2024
  • MultimodalAMR Public
    BorgwardtLab/MultimodalAMR’s past year of commit activity
    Python 0 1 0 0 Updated May 30, 2024
  • GraphMatchingSubstitutionMatrices Public

    Code and Data for the paper: Structure- and Function-Aware Substitution Matrices via Learnable Graph Matching (RECOMB 2024)

    BorgwardtLab/GraphMatchingSubstitutionMatrices’s past year of commit activity
    Python 2 MIT 0 0 0 Updated May 23, 2024
  • proteinshake-v1 Public Forked from BorgwardtLab/proteinshake

    Protein structure datasets for machine learning.

    BorgwardtLab/proteinshake-v1’s past year of commit activity
    Python 0 BSD-3-Clause 6 14 0 Updated Apr 29, 2024
  • DeepEST Public
    BorgwardtLab/DeepEST’s past year of commit activity
    Python 2 0 0 0 Updated Feb 9, 2024
  • HOGImine Public

    Higher-order genetic interaction discovery with network-based biological priors.

    BorgwardtLab/HOGImine’s past year of commit activity
    C++ 13 GPL-3.0 1 0 0 Updated Feb 8, 2024
  • LongCOVID Public

    Prediction of long COVID from proteomic and clinical data

    BorgwardtLab/LongCOVID’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 8, 2024
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