An open source Astrobwtv3 miner
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Updated
Jun 22, 2024 - C
An open source Astrobwtv3 miner
libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
Suffix Array implemented in c/c++ exposed to python through cython.
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
Bioinformatics Data Structures & Algorithms [such as the Q-Gram Index, scoring alignments , rna-structure prediction, generating the BLAST-Ńeighborhood and more.]
Library and command line utility to do approximate string matching of a source against a bitext index and get matched source and target.
fast and memory saving bsdiff 4.x compatible delta compressor and patcher
libcubwt is a library for GPU accelerated suffix array and burrows wheeler transform construction.
bsdiff is a library for building and applying patches to binary files.
FMAlign2: A novel fast multiple nucleotide sequence alignment method for ultra-long datasets
simple desktop app that apply some of DNA searching algorithms, with easy use desktop GUI using Pyqt6 lib in python.
Byte-aligned, efficient lossless packer that is optimized for fast decompression on 8-bit micros
A collection of powerful data structures are using java
Fast and portable delta encoding for .NET in 100% safe, managed code.
The esa-matchfinder is a C99 library for efficient Lempel-Ziv factorization using enhanced suffix array (ESA).
Implementation of suffix array
Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
DSAP Course Assignments 2022-2023
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
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