Modern scRNA-seq analysis tools in a single pipeline
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Updated
Jul 15, 2022 - R
Modern scRNA-seq analysis tools in a single pipeline
Permutation testing in single cell analysis
An example of immunopipe
TRIAGE is provided here as an R package comprised of three tools: 1) TRIAGEgene, 2) TRIAGEcluster, and 3) TRIAGEparser, along with a set of functions that streamlines creation of publication-ready figures and facilitates smoother data analysis.
Infer and visualize cell-cell communication for single-cell RNA-seq data
diabetes
scripts for scRNA-Seq/scATAC-Seq
Shiny web app builder for single-cell data
Analysis of Single-Cell RNA data from SRR14294834 in peripheral blood mononuclear cells in severe asthma
CD24 CART single cell analysis
Prediction of surface protein expression from mRNA expression using a regression auto-encoder neural network.
Package for analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.
Documentation analysis and manuscript figures
pCMF R package
Nek2 single cell analysis
This project employs Scanpy in Python for analyzing spatial transcriptomics data, encompassing preprocessing, quality control, clustering, and marker gene identification, resulting in informative visualizations to reveal gene expression patterns and cellular interactions within tissue samples.
Biological prior guided RNA kinetics inference
Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets
Single Cell Outlier Selector - quickly find outliers in your single-cell data
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