Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Lightweight function pipeline (DAG) creation in pure Python for scientific workflows 🕸️🧪

This tool presents a novel approach to bolstering network protocol verification by integrating the Shadow network simulator with the Ivy formal verification tool to check time properties. Furthermore, it extends Ivy’s capabilities with a dedicated time module, enabling the verification of complex quantitative-time properties.

moai is a PyTorch-based AI Model Development Kit (MDK) created to improve data-driven model workflows, design and reproducibility.

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

The GenePattern Server web application

Website for NA-MIC Project Weeks

Network Performance Framework: easy-to-use experiment manager with automated testing, result collection, and graphing

Programmable, reproducible, interactive documents

A platform for end-to-end development of machine learning solutions in biomedical imaging

🚀 Build and manage real-life ML, AI, and data science projects with ease!

CoLRev: An open-source environment for collaborative reviews

Website for the ReproducibiliTea Journal Club and Podcast

A lightweight version of R Markdown

Presentation-Ready Data Summary and Analytic Result Tables

An R package to create styled tables in multiple output formats, with a friendly, modern interface.

This is a course on software documentation for researchers developed by the Research Software Engineering team and IT Services at the University of Sheffield.