Nanopore based RNA-Seq pipeline for viral samples
-
Updated
Apr 6, 2020
Nanopore based RNA-Seq pipeline for viral samples
Documentation for running microPIPE at Pawsey
code getter for illumina, pacbio, oxford long reads alignments.
Nanopore long read assembly data pipeline for phage genomes
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
Run Oxford Nanopore MinION software in Docker containers. Mirror of https://gitlab.com/lapinskim/minion_docker
Wastewater Enterovirus Typing Tool
pattern detection in R using the stringR package for the pacbio and the oxford nanopore reads
bcftools for dealing with bcf files.
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
Nextflow pipeline incorporating the tracm alignment step alone.
Project to simulate simple Oxford Nanopore Technologies RNA signals
Documentation for the https://github.com/JannesSP/read5 repository
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado
polyATGC pacbio or oxford nanopore long reads trimmer.
This page is contains all the software and commands I've used for my mtDNA analysis.
long_read_polyATGC_trimmer using regular expression.
Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
poreSTAT: a python framework for working with fast5 third generation sequencing data
Add a description, image, and links to the oxford-nanopore topic page so that developers can more easily learn about it.
To associate your repository with the oxford-nanopore topic, visit your repo's landing page and select "manage topics."