A jupyter hub docker app for metabolic modelling using mewpy, troppo, cobra, etfl and cplex.
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Updated
Sep 16, 2022 - Shell
A jupyter hub docker app for metabolic modelling using mewpy, troppo, cobra, etfl and cplex.
This repository is used in relation with the Python package teemi for constructing microbial strains to de-bottleneck the strictosidine pathway.
Uses an evolutionary algorithm to design hundreds of microbial strains for overproduction of a desired chemical, while minimizing the number of required designs
Source code for EMILiO: A fast algorithm for genome-scale strain design.
An exploration of using FBA to engineer E. coli's metabolism in Julia
Code for Model-based Design of Bistable Cell Factories for Metabolic Engineering
EMILiO
DNA微分催化与肽计算, 元基花计算,进化计算,遗传计算,智慧计算,索引计算,元基编码,肽展公式,大数据计算分析, 数据加密
iJV803: a genome-scale metabolic model for Methylomicrobium album BG8
CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks
A RMosek optimization interface for the Sybil package
Genome-scale metabolic model of Cordyceps militaris
Genome-scale metabolic model of Rhodotorula toruloides
Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models
Chemical reaction balancing web service
Determination of product-growth-coupled strain designs employing stoichiometric metabolic models.
Library to perform metabolic engineering tasks
COnstraint Based Reconstruction and EXascale Analysis (in Julia)
Context-sensitive creation of kinetic equations in biochemical networks
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