super fast cpp implementation of longest common subsequence/substring
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Updated
Oct 25, 2023 - C++
super fast cpp implementation of longest common subsequence/substring
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Implementation of some known string algorithmn and data structures like: Rope, Trie, Knuth Morris Pratt, Boyer Moore, Levenshtein
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Distance related functions (Damerau-Levenshtein, Jaro-Winkler , longest common substring & subsequence) implemented as SQLite run-time loadable extension. Any UTF-8 strings are supported.
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The repository features a Python implementation of algorithms for analyzing DNA sequences. Its main functionality includes generating random DNA sequences, translating DNA to protein sequences, performing 6-frame translations, and finding the Longest Gene Expression (LGE) between two DNA sequences using a modified Longest Common Substring approach.
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Implementation of some known string algorithmn and data structures like: Rope, Trie, Knuth Morris Pratt, Boyer Moore, Levenshtein
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