Source code for EMILiO: A fast algorithm for genome-scale strain design.
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Updated
May 12, 2020 - MATLAB
Source code for EMILiO: A fast algorithm for genome-scale strain design.
Integrating the transcriptional regulatory network with genome-scale metabolic models.
Software developed and main results obtained in the Master dissertation: A model validation pipeline for healthy tissue genome-scale metabolic models. Dissertation link to be added.
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.
Constraint-solver to solve the problem of Field Missions-UAV-Pilot Scheduling
This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
Constraint-based metabolic modelling with sparse IPOPT
Memote-created repository for Rhodosporidium toruloides model iRhto
A coarse-grained biochemical resource allocation model of phototrophic growth.
Pretty awesome generic sudoku solver that is faster that you will ever be.
A metabolic modeling workflow for communities of organisms in an nasal medium.
Msc thesis project. Evaluation of gap-filling tools for constraint-based, genome-scale models.
Genome-scale metabolic reconstruction of Rhizophagus irregularis
Genome-scale metabolic model of Rhodotorula toruloides
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