Cell approximate nearest neighbors (ANN)
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Updated
Feb 1, 2024 - Python
Cell approximate nearest neighbors (ANN)
Fetch and format data matrices from AnnData
Neighbor graphs for single-cell data (AnnData)
Plotting assistant and resources
TeeSnee is an algorithm designed to take high-dimensional gene expression data and represent it in low-dimensional space.
AnnData wrapper of the ARD-NMF module from SignatureAnalyzer
anndata with trees
AnnData-compatible wrapper of Spotify's annoy library.
Awesome GRN enhanced AnnData toolkit
Michael Vinyard's utilities
Multimodal datasets, in MuData format
MuData-compatible storage for bioconductor's MultiAssayExperiment
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
Create PyTorch Datasets from AnnData
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