anndata
Here are 32 public repositories matching this topic...
Cell approximate nearest neighbors (ANN)
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Feb 1, 2024 - Python
Create PyTorch Datasets from AnnData
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Feb 1, 2024 - Jupyter Notebook
AnnData wrapper of the ARD-NMF module from SignatureAnalyzer
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Jun 6, 2022 - Jupyter Notebook
Fetch and format data matrices from AnnData
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Jan 19, 2024 - Jupyter Notebook
Neighbor graphs for single-cell data (AnnData)
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Feb 23, 2024 - Python
Plotting assistant and resources
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Jan 29, 2024 - Python
AnnData-compatible wrapper of Spotify's annoy library.
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Feb 1, 2024 - Python
Awesome GRN enhanced AnnData toolkit
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Jun 24, 2024 - Python
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
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Mar 16, 2024 - Python
Michael Vinyard's utilities
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Oct 27, 2021 - Jupyter Notebook
Multimodal datasets, in MuData format
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Jan 13, 2023 - Python
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
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Jan 23, 2023 - CSS
anndata with trees
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Jun 24, 2024 - Python
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Jul 12, 2022 - Python
pseudobulking on an AnnData object
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Jun 30, 2023 - Python
TeeSnee is an algorithm designed to take high-dimensional gene expression data and represent it in low-dimensional space.
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Jun 10, 2023 - Jupyter Notebook
MuData-compatible storage for bioconductor's MultiAssayExperiment
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Oct 12, 2023 - R
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