{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"nnUNet","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":["segmentation"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":12,"issueCount":151,"starsCount":5322,"forksCount":1628,"license":"Apache License 2.0","participation":[0,1,0,10,12,6,3,1,6,0,0,5,3,20,9,4,5,0,1,0,0,1,11,3,1,0,0,6,1,14,10,11,0,13,1,0,1,4,22,2,26,17,15,15,3,1,4,11,17,1,9,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-28T15:42:03.639Z"}},{"type":"Public","name":"radtract","owner":"MIC-DKFZ","isFork":false,"description":"RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T07:17:50.207Z"}},{"type":"Public","name":"agent-sam","owner":"MIC-DKFZ","isFork":false,"description":"Segment Anything model wrapper used by the Medical Imaging Interaction Toolkit (MITK).","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-25T14:36:33.851Z"}},{"type":"Public","name":"cOOpD","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":1,"license":"Apache License 2.0","participation":[0,18,7,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-24T18:46:57.034Z"}},{"type":"Public","name":"risk-adjusted-training-and-evaluation","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,3],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-24T13:13:14.788Z"}},{"type":"Public","name":"BraTPRO","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-24T12:54:11.102Z"}},{"type":"Public","name":"HD-BET","owner":"MIC-DKFZ","isFork":false,"description":"MRI brain extraction tool","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":19,"starsCount":254,"forksCount":61,"license":"Apache License 2.0","participation":[0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-20T13:41:26.594Z"}},{"type":"Public","name":"mood","owner":"MIC-DKFZ","isFork":false,"description":"Repository for the Medical Out-of-Distribution Analysis Challenge.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":2,"starsCount":59,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-17T23:23:39.583Z"}},{"type":"Public","name":"medicaldetectiontoolkit","owner":"MIC-DKFZ","isFork":false,"description":"The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images. ","allTopics":["deep-neural-networks","deep-learning","medical-imaging","segmentation","object-detection","medical-image-computing","semantic-segmentation","3d-models","medical-image-processing","mask-rcnn","u-net","medical-image-analysis","pytorch-cnn","3d-object-detection","pytorch-implementation","pytorch-deeplearning","retina-unet","3d-mask-rcnn","detection","retina-net"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":41,"starsCount":1275,"forksCount":298,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-17T22:47:46.133Z"}},{"type":"Public","name":"radiomics-workflow-definition","owner":"MIC-DKFZ","isFork":false,"description":"A consensus radiomics workflow definition (proposal) initiated bei the SPP 2177 Radiomics","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,6,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T17:42:25.194Z"}},{"type":"Public","name":"batchgeneratorsv2","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":12,"forksCount":3,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T09:57:09.616Z"}},{"type":"Public","name":"nnDetection","owner":"MIC-DKFZ","isFork":false,"description":"nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.","allTopics":["medical-imaging","medical-image-computing","3d-object-detection","pytorch-implementation","retina-unet","detection","medical"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":27,"starsCount":522,"forksCount":88,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-08T06:00:26.338Z"}},{"type":"Public","name":"MurineAirwaySegmentation","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":7,"forksCount":1,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,0,0,3,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-06T14:17:08.729Z"}},{"type":"Public","name":"MITK-Diffusion","owner":"MIC-DKFZ","isFork":false,"description":"MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit","allTopics":["simulation","dicom","registration","segmentation","modelling","brain","peak","diffusion-mri","tractography","denoising","dmri","fiber-tracts","diffusion-tensor","qballs","brainextraction","supplement-181","tractseg","diffusion-mri-simulation","fiberfox","mitk-diffusion"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":1,"starsCount":72,"forksCount":15,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-05T11:35:52.411Z"}},{"type":"Public","name":"MatchPoint","owner":"MIC-DKFZ","isFork":false,"description":"MatchPoint is a translational image registration framework written in C++. It offers a standardized interface to utilize several registration algorithm resources (like ITK, plastimatch, elastix) easily in a host application.","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T06:10:41.379Z"}},{"type":"Public","name":"image_classification","owner":"MIC-DKFZ","isFork":false,"description":"🎯 Deep Learning Framework for Image Classification & Regression in Pytorch for Fast Experiments","allTopics":["framework","computer-vision","lightning","image-processing","regression","cnn","hydra","classification","imagenet","image-classification","cifar","image-regression","pytorch-lightning","weights-and-biases","deep-learning","pytorch"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":38,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T07:33:13.992Z"}},{"type":"Public","name":"batchgenerators","owner":"MIC-DKFZ","isFork":false,"description":"A framework for data augmentation for 2D and 3D image classification and segmentation","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":8,"issueCount":32,"starsCount":1060,"forksCount":218,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T08:16:38.115Z"}},{"type":"Public","name":"patchly","owner":"MIC-DKFZ","isFork":false,"description":"A grid sampler for larger-than-memory N-dimensional images","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":22,"forksCount":1,"license":"Apache License 2.0","participation":[0,0,0,0,12,5,25,4,0,0,0,0,0,0,0,0,11,0,0,0,0,0,0,0,0,0,8,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,1,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T09:38:05.750Z"}},{"type":"Public","name":"foundation-models-for-cbmir","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":12,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-20T12:21:06.603Z"}},{"type":"Public","name":"dynamic-network-architectures","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":53,"forksCount":17,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-05T19:44:12.113Z"}},{"type":"Public","name":"MedNeXt","owner":"MIC-DKFZ","isFork":false,"description":"MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).","allTopics":["transformers","medical-imaging","medical-image-analysis","medical-image-segmentation","unet-image-segmentation","convnext","mednext"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":10,"starsCount":285,"forksCount":21,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,5,1,6,0,0,0,0,0,2,1,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-22T13:09:25.991Z"}},{"type":"Public","name":"BodyPartRegression","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":3,"starsCount":61,"forksCount":12,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T11:05:50.211Z"}},{"type":"Public","name":"AGGC2022","owner":"MIC-DKFZ","isFork":false,"description":"Automated Gleason Grading on WSI","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T12:50:09.916Z"}},{"type":"Public","name":"iScience_GlioLymph_classification","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-11T08:49:22.412Z"}},{"type":"Public","name":"mzarr","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T10:54:34.256Z"}},{"type":"Public","name":"tqdmp","owner":"MIC-DKFZ","isFork":false,"description":"Multiprocessing with tqdm progressbars!","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T09:43:19.476Z"}},{"type":"Public","name":"napari-sam","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":5,"starsCount":216,"forksCount":23,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-04T15:41:39.560Z"}},{"type":"Public","name":"misalignment_DA","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-01T10:16:52.875Z"}},{"type":"Public","name":"ParticleSeg3D","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-16T14:10:13.176Z"}},{"type":"Public","name":"acvl_utils","owner":"MIC-DKFZ","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":7,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-11T11:24:51.691Z"}}],"repositoryCount":58,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}