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the sidechainnet pkg updates, the load function doesnot has parameter return_masks and the format of casp12 data from scn has changed, which is not compatible with train_end2end.py #51

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ditannan opened this issue Mar 17, 2021 · 1 comment
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the sidechainnet pkg updates, the load function doesnot has parameter return_masks and the format of casp12 data from scn has changed, which is not compatible with train_end2end.py #51

ditannan opened this issue Mar 17, 2021 · 1 comment

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@ditannan
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alphafold2/train_end2end.py

Line 71 in b7ac212

return_masks = True

@ditannan ditannan changed the title the sidechainnet pkd updates, the load function doesnot has parameter return_masks and the format of casp12 data from scn has changed, which is not compatiblee sidechainnet pkd updates, the load function doesnot has parameter return_masks and the format of casp12 data from scn has changed, which is not compatible with the train_end2end.py the sidechainnet pkd updates, the load function doesnot has parameter return_masks and the format of casp12 data from scn has changed, which is not compatible with train_end2end.py Mar 17, 2021
@ditannan ditannan changed the title the sidechainnet pkd updates, the load function doesnot has parameter return_masks and the format of casp12 data from scn has changed, which is not compatible with train_end2end.py the sidechainnet pkg updates, the load function doesnot has parameter return_masks and the format of casp12 data from scn has changed, which is not compatible with train_end2end.py Mar 17, 2021
@hypnopump
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Noted.train_end2end.py doesn't work either way since a few modifications have been made to the main Alphafold2 class. will be adapting the code in the next days.

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@hypnopump @ditannan