GLMs2pdf_paperplanes.Rmd

---
title: "Linear, Generalized, and Mixed/Multilevel models - an introduction with R"
author: "Francisco Rodriguez-Sanchez"
date: "http://bit.ly/frod_san"
output:
  beamer_presentation:
    incremental: yes
    keep_tex: no
    fig_caption: FALSE
header-includes:
  - \def\begincols{\begin{columns}[c]}
  - \def\endcols{\end{columns}}
  - \def\begincol{\begin{column}{0.48\textwidth}}
  - \def\endcol{\end{column}} 
  - \setlength{\emergencystretch}{0em}
  - \setlength{\parskip}{0pt}
fontsize: 10pt
urlcolor: blue
linkcolor: blue
---


```{r include=FALSE, cache=FALSE}

library(rmarkdown)
library(knitr)

### Chunk options ###

## Text results
opts_chunk$set(echo = TRUE, warning = FALSE, message = FALSE)

## Code decoration
opts_chunk$set(tidy = FALSE, comment = NA, highlight = TRUE, size = "footnotesize")

# ## Cache
opts_chunk$set(cache = 2, cache.path = "knitr_output/cache/")
# opts_chunk$set(cache.extra = rand_seed)
# 
# ## Plots
opts_chunk$set(fig.path = "knitr_output/figures/")
# opts_chunk$set(dpi = 300, fig.align = "default")   # may want 'center' sometimes
# 
# # Figure format
# opts_chunk$set(dev='pdf')  # e.g. choose among 'pdf', 'png', 'svg'...
# # may include specific dev.args as a list... see knitr help



### Hooks ###

## Crop plot margins
#knit_hooks$set(crop = hook_pdfcrop)   


```


# Introduction to linear models

```{r child = 'lm_intro.Rmd'}
```


# Linear models

```{r child = 'lm_paperplanes.Rmd'}
```


# Generalised Linear Models: Logistic regression

```{r child = 'glm_binomial.Rmd'}
```


# GLM for count data: Poisson regression

```{r child = 'glm_poisson.Rmd'}
```


# Mixed / Multilevel models

```{r child = 'mixed_models.Rmd', eval=FALSE}
```



## END

![](images/CClogo.png)
     
Source code and materials: https://github.com/Pakillo/LM-GLM-GLMM-intro